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Data

Assemble automated and verified detections and site covariates.

fp_data()
Assemble data for a false-positive occupancy model
fp_data_wide()
Assemble data from detection matrices

Fitting

Fit the model and inspect, summarize, predict, and compare fits.

fp_occu()
Fit a Bayesian false-positive occupancy model
fp_priors()
Prior settings for fp_occu()
print(<fp_occu>) summary(<fp_occu>) print(<summary.fp_occu>) coef(<fp_occu>) predict(<fp_occu>) loo(<fp_occu>) as_draws_df(<fp_occu>)
Methods for fp_occu fits
fp_ppc()
Posterior predictive check for a false-positive occupancy model
fp_compile()
Compile (or load) the Stan model
fp_stan_file()
Path to the Stan program

Simulation and calibration

Simulate false-positive regimes and check interval calibration for a design.

simulate_fp()
Simulate data for a false-positive occupancy model
fp_calibrate()
Simulation-based calibration check for a study design
fp_verification_curve()
Coverage as a function of verification effort
fp_calibrate_fit()
Calibration of a fitted model on data like the real ones
simulate(<fp_occu>)
Simulate data from a fitted model
plot(<fp_calibration>)
Plot the results of a calibration check

Example data

Passive acoustic monitoring of the Common Pauraque in the Pantanal.

curiango
Passive acoustic monitoring of the Common Pauraque in the Pantanal

Package

crywolf crywolf-package
crywolf: Bayesian false-positive occupancy models with calibration checks
reexports loo as_draws_df
Objects exported from other packages